species:   Rhsol
pid:       PID0630
parent:    Rhi-milR-13
paralog:   
locus:     KB317790.1:1869-1980
matures:   ['ACUGAGACUUGCAUUGAUUG', 'AUCGAUGCAGGUCUCAGUUG']
srr:       SRR1994872
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram KB317790.1:1869-1980

4 out of bounds
69 alignments
47 proper strand
43 stranded perfect matches

                  *************************            *************************                                
CAAUCAAUGUGUUUACAAUGUAACUGAGACUUGCAUUGAUUGGUUGGAUGCCAAACCAAUCGAUGCAGGUCUCAGUUGCAUUGUAAACACAUCAAUUGGUUUGGCAUCCAAC
((((..(((((((((((((((((((((((((((((((((((((((((...)).)))))))))))))))))))))))))))))))))))))))..))))..((((...)))).
----------------------ACUGAGACUUGCAUUGAUUG---------------------------------------------------------------------- l=20 a=0 c
----------------------------------------------------------AUCGAUGCAGGUCUCAGUUG---------------------------------- l=20 a=0 c*
--------------------UAACUGAGACUUGCAUUGAUUGG--------------------------------------------------------------------- l=23 a=26 ma
---------------------------------------------------------AAUCGAUGCAGGUCUCAGUUGCA-------------------------------- l=23 a=0 ma*

------------------UGUAACUGAGACUUGCAUUGA------------------------------------------------------------------------- l=21 a=1 
--------------------UAACUGAGACUUGCAUUGAU------------------------------------------------------------------------ l=20 a=1 
--------------------UAACUGAGACUUGCAUUGAUa----------------------------------------------------------------------- l=21 a=1 
--------------------UAACUGAGACUUGCAUUGAUUG---------------------------------------------------------------------- l=22 a=1 
--------------------UAACUGAGACUUGCAUUGAUUGG--------------------------------------------------------------------- l=23 a=26 (ma)
--------------------UAACUGAGACUUGCAUUGAUUGGU-------------------------------------------------------------------- l=24 a=5 
--------------------UAACUGAGACUUGCAUUGAUUGGUa------------------------------------------------------------------- l=25 a=1 
----------------------ACUGAGACUUGCAUUGAUUGGUUGGA---------------------------------------------------------------- l=26 a=1 
-----------------------CUGAGACUUGCAUUGAUUGGUUGG----------------------------------------------------------------- l=24 a=1 
------------------------UGAGACUUGCAUUGAUUGGUcGG----------------------------------------------------------------- l=23 a=1 
------------------------UGAGACUUGCAUUGAUUGGUUGG----------------------------------------------------------------- l=23 a=2 
------------------------UGAGACUUGCAUUGAUUGGUUGGA---------------------------------------------------------------- l=24 a=4 
--------------------------AGACUUGCAUUGAUUGGUUGGAUG-------------------------------------------------------------- l=24 a=1 
----------------------------ACUUGCAUUGAUUGGUUGGAUGCa------------------------------------------------------------ l=24 a=1 

mb-01011
ax-1011011
ku-00
ss-111110111100
fn-101
